4 Mar
2014
4 Mar
'14
8:02 a.m.
Hello trinity users
I used Trinity to assemble ~700M paired-end reads using the following
command
"Trinity.pl --seqType fq --left left.fq --right right.fq --SS_lib_type FR
--output ./ --JM 300G --CPU 15"
The run was successful, and I got a list of contigs.
Now I realize that the data was not strand specific, and I am wondering
how
does the adding of "--SS_lib_type FR" parameter affect the assembly.
Shall I redo the assembly?
Thanks
Mali
I don't think this is the mailing list you are looking for. Perhaps you
meant the Trinity RNA sequencer list at
https://lists.sourceforge.net/lists/listinfo/trinityrnaseq-users ?
This list is for discussion about the Trinity Desktop Environment:
http://www.trinitydesktop.org/
Tim